The Bumblebees Scarcity Syndrome: Are heat waves leading to local extinctions of bumblebees (Hymenoptera: Apidae: Bombus)?

It is now well known that many bumblebee species are threatened in Europe and in N. America. Various hypotheses have been proposed to explain this regression. Some of the hypothetical factors act at a continental level, as the general restructuration of the agriculture toward the use of synthetic nitrogen fertilisation, in place of leguminous crops. The landscape fragmentation is typically a local factor the fusion of which also leads to large-scale effects. Since 2002, we observed a great number of situations where local droughts and heat waves occurred in France, UK, Scandinavia, Turkey, leading to very strong local reductions of the bumblebee’s fauna. We observed so many local cases in 2007–2009 that we could hypothesise that a merger of these local effects could lead to a new general threat. As they are the most exposed to heat waves, the species with a late (summer) phenology should be the most sensitive to this risk.     

Identification and genetic effect of haplotype in the bovine BMP7 gene

Bone morphogenetic proteins (BMPs) are peptide growth factors belonging to the transforming growth factor-beta (TGF-β) superfamily, and some members of the BMP family support white adipocyte differentiation. In this study, we focused on the BMP7 which singularly promotes the differentiation of brown preadipocytes. Haplotypes involving 5 single nucleotide polymorphism (SNP) sites in the bovine BMP7 gene were identified and their effect on body weight was analyzed. 16 haplotypes and 18 combined haplotypes were revealed and the linkage disequilibrium was assessed in the cattle population with 602 individuals representing three main cattle breeds from China. The results showed that haplotypes 3, 10 and 14 were predominant and accounted for 75.64%, 69.85%, and 83.36% in Nanyang, Qinchuan and Jiaxian cattle breeds, respectively. The statistical analyses indicated that the SNP 1, 4, and 5 are associated with the body weight, body length, and heart girth at 12 and 24 months in Nanyang cattle population (P < 0.05), whereas there is no significant association between their 16 haplotypes and 18 combined haplotypes. Our results provide evidence that some SNPs and haplotypes in BMP7 are associated with growth traits, and may be utilized as a genetic marker in marker-assisted selection for beef cattle breeding programs.     

Transposase concentration controls transposition activity: Myth or reality?

Deciphering the mechanisms underlying the regulation of DNA transposons might be central to understanding their function and dynamics in genomes. From results obtained under artificial experimental conditions, it has been proposed that some DNA transposons self-regulate their activity via overproduction inhibition (OPI), a mechanism by which transposition activity is down-regulated when the transposase is overconcentrated in cells. However, numerous studies have given contradictory results depending on the experimental conditions. Moreover, we do not know in which cellular compartment this phenomenon takes place, or whether transposases assemble to form dense foci when they are highly expressed in cells.     

Sex estimation based on deciduous and permanent dentition in a contemporary spanish population

Sex estimation of skeletal remains with satisfactory allocation accuracy represents an essential step in reconstructing the biological profile of unknown individuals in archaeological research and forensic practice. Teeth are among the most frequently recovered physical elements of an individual that remain after death due to their hardness, durability, and resistance to postmortem insults. This study was based on the deciduous and permanent dentition of 269 individuals (150 males and 119 females) from the Granada osteological collection of identified infants, young children, and adults (Granada, Spain). Mesiodistal, buccolingual, and diagonal crown and cervical diameters of both dentitions were measured, and logistic regression analyses were performed to create equations for sex discrimination. The results show that the first and second deciduous molars and the permanent canines are the teeth with the greatest sexual dimorphism, providing percentages of correct assignment of sex between 78.1 and 93.1% in deciduous dentition and between 79.4 and 92.6% in permanent teeth, depending on the dimensions used. The results indicate that this method may be applicable as an adjunct with other accepted procedures for sex estimation when fragmentary skeletal remains are encountered in archaeological excavations and in forensic contexts. Am J Phys Anthropol 152:163–164, 2013. © 2013 Wiley Periodicals, Inc.     

Prediction of regulation relationship between protein interactions in signaling networks

The discovery of regulation relationship of protein interactions is crucial for the mechanism research in signaling network. Bioinformatics methods can be used to accelerate the discovery of regulation relationship between protein interactions, to distinguish the activation relations from inhibition relations. In this paper, we describe a novel method to predict the regulation relations of protein interactions in the signaling network. We detected 4,417 domain pairs that were significantly enriched in the activation or inhibition dataset. Three machine learning methods, logistic regression, support vector machines(SVMs), and naïve bayes, were explored in the classifier models. The prediction power of three different models was evaluated by 5-fold cross-validation and the independent test dataset. The area under the receiver operating characteristic curve for logistic regression, SVM, and naïve bayes models was 0.946, 0.905 and 0.809, respectively. Finally, the logistic regression classifier was applied to the human proteome-wide interaction dataset, and 2,591 interactions were predicted with their regulation relations, with 2,048 in activation and 543 in inhibition. This model based on domains can be used to identify the regulation relations between protein interactions and furthermore reconstruct signaling pathways.     

Long-term population declines in Danish trans-Saharan migrant birds

Capsule Long-distance migrant birds show less favourable trends than sedentary/short-distance species.

Aims To use breeding bird surveys to contrast population trends amongst common species according to their migration pattern.

Methods Changes in abundance of 62 Danish breeding sedentary, short-distance (Europe/North Africa) or long-distance (trans-Saharan) migrants were described by fitting log linear regression models to point-count census data gathered during 1976–2005.

Results Trans-Saharan migrants declined by 1.3% per annum during this period, while short-distance migrants and sedentary species increased by 1.4% and 1.0% per annum, respectively. There were no significant decadal declines amongst species using different summer breeding habitats, except for wetlands, and there was no consistent variation in trends associated with wintering regions or habitats or diet.

Conclusions More information is urgently needed on diet, feeding ecology, habitat requirements, winter distribution and intra-African movements of the commoner European summer visitors to identify causes of the declines and highlight when in the annual cycle detrimental effects occur. Studies linking individuals on their breeding, staging and wintering grounds are especially needed. Danish trends resemble those from elsewhere in Europe, confirming that restoration to favourable conservation status requires inter-continental action to meet European and global targets to reduce or halt biodiversity loss.     

COMPARATIVE ANALYSIS OF ANIMAL GROWTH: A PRIMATE CONTINUUM REVEALED BY A NEW DIMENSIONLESS GROWTH RATE COEFFICIENT

The comparative analysis of animal growth still awaits full integration into life‐history studies, partially due to the difficulty of defining a comparable measure of growth rate across species. Using growth data from 50 primate species, we introduce a modified "general growth model" and a dimensionless growth rate coefficient β that controls for size scaling and phylogenetic effects in the distribution of growth rates. Our results contradict the prevailing idea that slow growth characterizes primates as a group: the observed range of β values shows that not all primates grow slowly, with galago species exhibiting growth rates similar or above the mammalian average, while other strepsirrhines and most New World monkeys show limited reduction in growth rates. Low growth rate characterizes apes and some papionines. Phylogenetic regressions reveal associations between β and life‐history variables, providing tests for theories of primate growth evolution. We also show that primate slow growth is an exclusively postnatal phenomenon. Our study exemplifies how the dimensionless approach promotes the integration of growth rate data into comparative life‐history analysis, and demonstrates its potential applicability to other cases of adaptive diversification of animal growth patterns.     

The effect of the meteorological factors on the Alnus pollen season in Lublin (Poland)

Alder pollen seasons and the effect of meteorological conditions on daily average pollen counts in the air of Lublin (Poland) were analysed. Alnus pollen grains reach very high concentrations in the atmosphere of this city during the early spring period and the parameters of pollen seasons were very different in the particular years studied. The pollen season lasted on average one month. The highest variation was observed for the peak value and the Seasonal Pollen Index (SPI). The pollen seasons, which started later, had shorter duration. Peak daily average pollen counts and SPI value were higher during the shorter seasons. Similarities in the stages of pollen seasons designated by the percentage method depended on the start date of the pollen season. Season parameters were mainly correlated with thermal conditions at the beginning of the year. Regression analysis was used to predict certain characteristics of the alder pollen season. The highest level of explanation of the variation in Alnus pollen season start and peak dates was obtained in the model using mean temperature in February. The obtained regression models may predict 82% of the variation in the pollen season start date, 73% of the variation in the duration, and 62% in the peak date.     

大线性质粒pHZ1000,pHZ1001在链霉菌种间的接合转移

从1979年首先在娄彻氏链霉菌(Ｓｔｒｅｐｔｏｍｙｃｅｓｒｏｃｈｅｉ)中发现第一例原核生物线性质粒ｐＳＬＡ2[1]至今,人们已在多种链霉菌中发现了线性质粒,大小12ｋｂ到640ｋｂ不等[2]。从红球菌[3]和诺卡氏菌中[4],在硫杆菌属和螺旋体属中,以及酵母、丝状真菌等真核生物中也都陆续发现了线性质粒的存在[5],大肠杆菌噬菌体Ｎ15的原噬菌体也是一种特殊的线性质粒[6]。线性质粒存在的生物学意义引起了人们的浓厚兴趣。然而20多年以来,链霉菌线性质粒,尤其是大线性质粒的研究始终进展不快。目前有关链霉菌线性质粒复制机理、端粒结构的阐明,都…